Publications

2022

Hampel JJ, Moseley RD, Mugge RL, Ray A, Damour M, Jones D, Hamdan LJ (2022) Deep-sea wooden shipwrecks influence sediment microbiome diversity. Limnol. Oceanogr. doi: 10.1002/lno.12008

2021

Treude T, Hamdan LJ, Lemieux S, Dale AW, Sommer S (2021) Rapid sulfur cycling in sediments from the Peruvian oxygen minimum zone featuring simultaneous sulfate reduction and sulfide oxidation. Limnol. Oceanogr. doi: 10.1002/lno.11779

Hamdan LJ, Hampel JJ, Moseley RD, Mugge RL, Ray A, Salerno JL, Damour M (2021) Deep-sea shipwrecks represent island-like ecosystems for marine microbiomes. ISME J. doi: 10.1038/s41396-021-00978-y

Mugge RL, Salerno JL, Hamdan LJ (2021) Microbial Functional Responses in Marine Biofilms Exposed to Deepwater Horizon Spill Contaminants. Front. Microbiol. 12:636054. doi: 10.3389/fmicb.2021.636054

2020

Treude T, Krause S, Steinle L, Burwicz E, Hamdan LJ, Niemann H, Feseker T, Libetrau V, Krastel S, Berndt C (2020) Biogeochemical consequences of nonvertical methane transport in sediment offshore northwestern Svalbard. J. Geophysical Res. 125:1. doi: 10.1029/2019JG005371

Hamdan LJ (2020) Microbial Stowaways: Exploring shipwreck microbiomes in the deep Gulf of Mexico. Oceanography 33:97. 10.5670/oceanog.2020.supplement.01

2019

Mugge RL, Lee JS, Brown TT, Hamdan LJ (2019) Marine biofilm bacterial community response and carbon steel loss following Deepwater Horizon spill contaminant exposure. Biofouling. 35, 870-882. doi: 10.1080/08927014.2019.1673377

Mugge RL, Brock ML, Salerno JL, Damour M, Church RA, Lee J, Hamdan LJ (2019) Deep sea biofilms, historic shipwreck preservation and the Deepwater Horizon spill. Front. Mar. Sci. 6: 1. doi: 10.3389/fmars.2019.00048

2018

Hamdan LJ, Salerno JL, Reed A, Joye SB, Damour M (2018) The impact of the Deepwater Horizon blowout on historic shipwreck-associated sediment microbiomes in the northern Gulf of Mexico. Nature Sci. Rep. doi: 10.1038/s41598-018-27350-z

Salerno JL, Little B, Lee J, Hamdan LJ (2018) Exposure to crude oil and chemical dispersant may impact marine microbial biofilm composition and steel corrosion. Front. Mar. Sci. doi: 10.3389/fmars.2018.00196

Haridas D, Biffinger JC, Boyd TJ, Fulmer PA, Hamdan LJ, Fitzgerald LA (2018) Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico. F1000 Research. doi: 10.12688/f1000research.12713.2

Mulvaney SP, Fitzgerald LA, Hamdan LJ, Ringeisen BR, et al. (2018) Rapid design and fielding of four diagnostic technologies in Sierra Leone, Thailand, Peru, and Australia: Successes and challenges faced introducing these biosensors. Sensing & Bio-Sensing Res. doi: 10.1016/j.sbsr.2018.06.003

2017

Lajtha K, Bai E, Baisden T, Berhe AA, Bowden B, Brookshire J, Brozostek E, Crow S, Driscol C, Evans C, Finlay J, Fisk M, Grandy S, Hamdan LJ, Harrison J, Hawkes C, Kalbitz K, Kaushal S, Kramer M, Matzner E, Melack J, Mulder J, Porder S, Sanderman J, Stanley E, Tank J, Vile M, Voss M, Wieder K, Ziegler S. (2017) Brave new world: Editorial in support of environmental science. Biogeochemistry. doi: 10.1007/s10533-017-0316-y

2016

Hamdan LJ, Wickland KP (2016). Methane emissions from oceans, coasts, and freshwater habitats: New perspectives and feedbacks on climate. Limnol. Oceanogr. 61: S3-S12. doi: 10.1002/lno.10449

Damour M, Church R, Warren D, Horrell C, Hamdan LJ (2016) Gulf of Mexico-Shipwreck Corrosion, Hydrocarbon Exposure, Microbiology, and Archaeology (GOM-SCHEMA) Project: Studying the Effects of a Major Oil Spill on Submerged Cultural Resources. In Marco Meniketti (ed.) ACUA Underwater Archaeology Proceedings of the 2015 Annual Meeting of the Society for Historical Archaeology, Seattle, WA, pgs. 51–61. Link

Salerno JL, Bowen, B.W., and M.S. Rappé. Biogeography of planktonic and coral-associated microorganisms across the Hawaiian Archipelago. 2016. FEMS Microbial Ecology 92:8. doi: 10.1093/femsec/fiw109

2014

Treude T, Krause S, Schweers J, Dale A, Hamdan LJ (2014) Sulfate reduction and methane oxidation activity below the sulfate-methane transition zone in Alaskan-Beaufort continental margin sediments: Implications for deep sulfur cycling. Geochim. Cosmochim. Acta. 144: 217-237. doi: 10.1016/j.gca.2014.08.018

Kirchman DL, Hanson TE, Cottrell MT, Hamdan LJ (2014) Metagenomic analysis of organic matter degradation in methane-rich Arctic Ocean sediments. Limnol. Oceanogr. 59: 548-559. doi: 10.4319/lo.2014.59.2.0548

Coffin RB, Hamdan LJ, Smith J, Plummer RE, Yoza B, Pecher I, Montgomery MT (2014) The Contribution of Vertical Methane Flux to Shallow Sediment Carbon Pools across the Porangahau Ridge, NZ. Energies. 7: 5322-5356. doi: doi.org/10.3390/en7085332

Gilbert JA, Ball M, Blainey P, Blaser MJ, Bohannan B, Bateman A, Bunge J, Dominguez-Bello MG, Epstein, S, Fierer N, Gevers D, Girkscheit T, Hamdan LJ, Harvey J, Huttenhower C, Kirkup B, Kong H, Lauber C, Lemon KP, Lynch SV, Martin L, Mello C, Palma J, Parker R, Petrosino J, Segre JA, Vosshall L, Yi R, Knight R (2014) Meeting Report for the 1st skin microbiota workshop, Boulder, CO October 15-16 2012. Stand. Genomic Sci. 9: 1-7. doi: doi.org/10.1186/1944-3277-9-13

Leary DH, Li RW, Hervey WJ, Lebedev N, Hamdan LJ, Wang Z, Deschamps JR, Kusterbeck AW, Vora GJ (2014) Integrated metagenomic and metaproteomic analyses of marine biofilms communities. Biofouling 30: 1211-1223. doi: 10.1080/08927014.2014.977267

2013

Hamdan LJ, Coffin RB, Sikaroodi M, Greinert J, Treude T, Gillevet PM (2013) Ocean currents shape the microbiome of Arctic marine sediments. ISME J. 7: 685-696. doi: 10.1038/ismej.2012.143

2012

Hamdan LJ, Sikaroodi M, Gillevet PM (2012) Bacterial community composition and diversity in methane charged sediments revealed by multitag pyrosequencing. Geomicrobiology J. 29: 340-351. doi: 10.1080/01490451.2011.559305

Howard EC, Hamdan LJ, Lizewski SE, Ringeisen BR (2012) High frequency of glucose-utilizing mutants in Shewanella oneidensis MR-1. FEMS Microbiol. Lett. 327: 9-14. doi: 10.1111/j.1574-6968.2011.02450.x

2011

Hamdan LJ, Fulmer PA (2011) Effects of COREXIT® EC9500A on bacteria from a beach oiled by the Deepwater Horizon spill. Aquatic Microbial Ecol. 63: 101-109. (Feature Article). doi: 10.3354/ame01482

Hamdan LJ, Gillevet PM, Pohlman JW, Sikaroodi M, Greinert J, Coffin RB (2011) Diversity and biogeochemical structuring of bacterial communities across the Porangahau ridge accretionary prism, New Zealand. FEMS Microbiol. Ecol. 77: 518-532. doi: 10.1111/j.1574-6941.2011.01133.x

Salerno JL, Reineman DR, Gates RD, Rappé MS (2011) The effect of a sub lethal temperature elevation on the structure of bacterial communities associated with the coral Porites Compressa. J. Mar. Bio. Article ID 969173. doi: 10.1155/2011/969173

2010

Schwalenberg K, Wood WT, Pecher I, Hamdan LJ, Henrys S, Jegen M, Coffin RB (2010) Preliminary interpretation of CSEM, heatflow, seismic, and geochemical data for gas hydrate distribution across the Porangahau Ridge, New Zealand. Mar. Geol. 272: 89-98. doi: 10.1016/j.margeo.2009.10.024

2008

Hamdan LJ, Gillevet PM, Sikaroodi M, Pohlman JW, Plummer RE, Coffin RB (2008) Geomicrobial characterization of gas hydrate bearing sediments along the mid-Chilean Margin. FEMS Microbiol. Ecol. 65: 15-30. doi: 10.1111/j.1574-6941.2008.00507.x

Coffin RB, Hamdan LJ, Smith JP, Gardner J, Plummer RE, Wood WT (2008) Analysis of methane and sulfate flux in methane-charged sediments from the Mississippi Canyon, Gulf of Mexico. Mar. Petrol. Geol. 25: 977-987. doi: 10.1016/j.marpetgeo.2008.01.014

Steen AD, Hamdan LJ, Arnosti C (2008) Dynamics of dissolved carbohydrates in the Chesapeake Bay: Insights from enzyme activities, concentrations, and microbial metabolism. Limnol. Oceanogr. 53: 936-947. doi: 10.4319/LO.2008.53.3.0936

Boyd TJ, Smith DC, Apple JK, Hamdan LJ, Osburn CL, Montgomery MT (2008) Evaluating PAH biodegradation relative to bacterial carbon demand in coastal ecosystems: Are PAHs truly recalcitrant? In: Microbial Ecology Research Trends. NOVA Sci. Publishers, Inc., Hauppauge, NY. Link

2007

Hamdan LJ, Jonas RB (2007) The use of antibiotics to reduce bacterioplankton uptake of phytoplankton extracellular organic carbon (EOC) in the Potomac River estuary. JEMBE. 342: 242-252, doi: 10.1016/j.jembe.2006.10.054

Coffin RB, Pohlman JW, Gardner JM, Downer RC, Wood WT, Hamdan LJ, Walker SE, Plummer RE, Gettrust JF, Diaz J (2007) Methane hydrate exploration on the mid-Chilean Coast: A geochemical and geophysical survey. J Petrol. Sci. Eng. 56: 32-41. doi: 10.1016/j.petrol.2006.01.013

2006

Hamdan LJ, Jonas RB (2006) Seasonal and inter-annual dynamics of free-living bacterioplankton and microbially labile organic carbon along the salinity gradient of the Potomac River. Estuaries Coasts. 29: 40-53. Link 

2005

Salerno JL, Macko SA, Hallam SJ, Bright M, Won YJ, McKiness Z, Van Dover CL (2005) Characterization of symbiont populations in life-history stages of mussels from chemosynthetic environments. Biol. Bull. 208(2): 145-155. doi: 10.2307/3593123 

2003

Van Dover CL, Aharon P, Bernhard JM, Caylor E, Doerries M, Flickinger W, Gilhooly W, Goffredi SK, Knick KE, Macko SA, Rapoport S, Raulfs EC, Ruppel C, Salerno JL, Seitz RD, Sen Gupta BK, Shank T, Turnipseed M, Vrijenhoek R (2003) Blake Ridge methane seeps: characterization of a soft-sediment, chemosynthetically based ecosystem. Deep-Sea Research. 50(2): 281-300. doi: 10.1016/S0967-0637(02)00162-0

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