2022
Moseley RD, Hampel JJ, Mugge RL, Hamdan LJ (2022) Historic Wooden Shipwrecks Influence Dispersal of Deep-Sea Biofilms. Front. Mar. Sci. doi: 10.3389/fmars.2022.873445
Hampel JJ, Moseley RD, Hamdan LJ (2022) Microbiomes respond predictably to built habitats on the seafloor. Mol. Ecol. doi: 10.1111/mec.16504
Hampel JJ, Moseley RD, Mugge RL, Ray A, Damour M, Jones D, Hamdan LJ (2022) Deep-sea wooden shipwrecks influence sediment microbiome diversity. Limnol. Oceanogr. doi: 10.1002/lno.12008
2021
Treude T, Hamdan LJ, Lemieux S, Dale AW, Sommer S (2021) Rapid sulfur cycling in sediments from the Peruvian oxygen minimum zone featuring simultaneous sulfate reduction and sulfide oxidation. Limnol. Oceanogr. doi: 10.1002/lno.11779
Hamdan LJ, Hampel JJ, Moseley RD, Mugge RL, Ray A, Salerno JL, Damour M (2021) Deep-sea shipwrecks represent island-like ecosystems for marine microbiomes. ISME J. doi: 10.1038/s41396-021-00978-y
Mugge RL, Salerno JL, Hamdan LJ (2021) Microbial Functional Responses in Marine Biofilms Exposed to Deepwater Horizon Spill Contaminants. Front. Microbiol. 12:636054. doi: 10.3389/fmicb.2021.636054
2020
Treude T, Krause S, Steinle L, Burwicz E, Hamdan LJ, Niemann H, Feseker T, Libetrau V, Krastel S, Berndt C (2020) Biogeochemical consequences of nonvertical methane transport in sediment offshore northwestern Svalbard. J. Geophysical Res. 125:1. doi: 10.1029/2019JG005371
Hamdan LJ (2020) Microbial Stowaways: Exploring shipwreck microbiomes in the deep Gulf of Mexico. Oceanography 33:97. 10.5670/oceanog.2020.supplement.01
2019
Mugge RL, Lee JS, Brown TT, Hamdan LJ (2019) Marine biofilm bacterial community response and carbon steel loss following Deepwater Horizon spill contaminant exposure. Biofouling. 35, 870-882. doi: 10.1080/08927014.2019.1673377
Mugge RL, Brock ML, Salerno JL, Damour M, Church RA, Lee J, Hamdan LJ (2019) Deep sea biofilms, historic shipwreck preservation and the Deepwater Horizon spill. Front. Mar. Sci. 6: 1. doi: 10.3389/fmars.2019.00048
2018
Hamdan LJ, Salerno JL, Reed A, Joye SB, Damour M (2018) The impact of the Deepwater Horizon blowout on historic shipwreck-associated sediment microbiomes in the northern Gulf of Mexico. Nature Sci. Rep. doi: 10.1038/s41598-018-27350-z
Salerno JL, Little B, Lee J, Hamdan LJ (2018) Exposure to crude oil and chemical dispersant may impact marine microbial biofilm composition and steel corrosion. Front. Mar. Sci. doi: 10.3389/fmars.2018.00196
Haridas D, Biffinger JC, Boyd TJ, Fulmer PA, Hamdan LJ, Fitzgerald LA (2018) Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico. F1000 Research. doi: 10.12688/f1000research.12713.2
Mulvaney SP, Fitzgerald LA, Hamdan LJ, Ringeisen BR, et al. (2018) Rapid design and fielding of four diagnostic technologies in Sierra Leone, Thailand, Peru, and Australia: Successes and challenges faced introducing these biosensors. Sensing & Bio-Sensing Res. doi: 10.1016/j.sbsr.2018.06.003
2017
Lajtha K, Bai E, Baisden T, Berhe AA, Bowden B, Brookshire J, Brozostek E, Crow S, Driscol C, Evans C, Finlay J, Fisk M, Grandy S, Hamdan LJ, Harrison J, Hawkes C, Kalbitz K, Kaushal S, Kramer M, Matzner E, Melack J, Mulder J, Porder S, Sanderman J, Stanley E, Tank J, Vile M, Voss M, Wieder K, Ziegler S. (2017) Brave new world: Editorial in support of environmental science. Biogeochemistry. doi: 10.1007/s10533-017-0316-y
2016
Hamdan LJ, Wickland KP (2016). Methane emissions from oceans, coasts, and freshwater habitats: New perspectives and feedbacks on climate. Limnol. Oceanogr. 61: S3-S12. doi: 10.1002/lno.10449
Damour M, Church R, Warren D, Horrell C, Hamdan LJ (2016) Gulf of Mexico-Shipwreck Corrosion, Hydrocarbon Exposure, Microbiology, and Archaeology (GOM-SCHEMA) Project: Studying the Effects of a Major Oil Spill on Submerged Cultural Resources. In Marco Meniketti (ed.) ACUA Underwater Archaeology Proceedings of the 2015 Annual Meeting of the Society for Historical Archaeology, Seattle, WA, pgs. 51–61. Link
Salerno JL, Bowen, B.W., and M.S. Rappé. Biogeography of planktonic and coral-associated microorganisms across the Hawaiian Archipelago. 2016. FEMS Microbial Ecology 92:8. doi: 10.1093/femsec/fiw109
2014
Treude T, Krause S, Schweers J, Dale A, Hamdan LJ (2014) Sulfate reduction and methane oxidation activity below the sulfate-methane transition zone in Alaskan-Beaufort continental margin sediments: Implications for deep sulfur cycling. Geochim. Cosmochim. Acta. 144: 217-237. doi: 10.1016/j.gca.2014.08.018
Kirchman DL, Hanson TE, Cottrell MT, Hamdan LJ (2014) Metagenomic analysis of organic matter degradation in methane-rich Arctic Ocean sediments. Limnol. Oceanogr. 59: 548-559. doi: 10.4319/lo.2014.59.2.0548
Coffin RB, Hamdan LJ, Smith J, Plummer RE, Yoza B, Pecher I, Montgomery MT (2014) The Contribution of Vertical Methane Flux to Shallow Sediment Carbon Pools across the Porangahau Ridge, NZ. Energies. 7: 5322-5356. doi: doi.org/10.3390/en7085332
Gilbert JA, Ball M, Blainey P, Blaser MJ, Bohannan B, Bateman A, Bunge J, Dominguez-Bello MG, Epstein, S, Fierer N, Gevers D, Girkscheit T, Hamdan LJ, Harvey J, Huttenhower C, Kirkup B, Kong H, Lauber C, Lemon KP, Lynch SV, Martin L, Mello C, Palma J, Parker R, Petrosino J, Segre JA, Vosshall L, Yi R, Knight R (2014) Meeting Report for the 1st skin microbiota workshop, Boulder, CO October 15-16 2012. Stand. Genomic Sci. 9: 1-7. doi: doi.org/10.1186/1944-3277-9-13
Leary DH, Li RW, Hervey WJ, Lebedev N, Hamdan LJ, Wang Z, Deschamps JR, Kusterbeck AW, Vora GJ (2014) Integrated metagenomic and metaproteomic analyses of marine biofilms communities. Biofouling 30: 1211-1223. doi: 10.1080/08927014.2014.977267
2013
Hamdan LJ, Coffin RB, Sikaroodi M, Greinert J, Treude T, Gillevet PM (2013) Ocean currents shape the microbiome of Arctic marine sediments. ISME J. 7: 685-696. doi: 10.1038/ismej.2012.143
2012
Hamdan LJ, Sikaroodi M, Gillevet PM (2012) Bacterial community composition and diversity in methane charged sediments revealed by multitag pyrosequencing. Geomicrobiology J. 29: 340-351. doi: 10.1080/01490451.2011.559305
Howard EC, Hamdan LJ, Lizewski SE, Ringeisen BR (2012) High frequency of glucose-utilizing mutants in Shewanella oneidensis MR-1. FEMS Microbiol. Lett. 327: 9-14. doi: 10.1111/j.1574-6968.2011.02450.x
2011
Hamdan LJ, Fulmer PA (2011) Effects of COREXIT® EC9500A on bacteria from a beach oiled by the Deepwater Horizon spill. Aquatic Microbial Ecol. 63: 101-109. (Feature Article). doi: 10.3354/ame01482
Hamdan LJ, Gillevet PM, Pohlman JW, Sikaroodi M, Greinert J, Coffin RB (2011) Diversity and biogeochemical structuring of bacterial communities across the Porangahau ridge accretionary prism, New Zealand. FEMS Microbiol. Ecol. 77: 518-532. doi: 10.1111/j.1574-6941.2011.01133.x
Salerno JL, Reineman DR, Gates RD, Rappé MS (2011) The effect of a sub lethal temperature elevation on the structure of bacterial communities associated with the coral Porites Compressa. J. Mar. Bio. Article ID 969173. doi: 10.1155/2011/969173
2010
Schwalenberg K, Wood WT, Pecher I, Hamdan LJ, Henrys S, Jegen M, Coffin RB (2010) Preliminary interpretation of CSEM, heatflow, seismic, and geochemical data for gas hydrate distribution across the Porangahau Ridge, New Zealand. Mar. Geol. 272: 89-98. doi: 10.1016/j.margeo.2009.10.024
2008
Hamdan LJ, Gillevet PM, Sikaroodi M, Pohlman JW, Plummer RE, Coffin RB (2008) Geomicrobial characterization of gas hydrate bearing sediments along the mid-Chilean Margin. FEMS Microbiol. Ecol. 65: 15-30. doi: 10.1111/j.1574-6941.2008.00507.x
Coffin RB, Hamdan LJ, Smith JP, Gardner J, Plummer RE, Wood WT (2008) Analysis of methane and sulfate flux in methane-charged sediments from the Mississippi Canyon, Gulf of Mexico. Mar. Petrol. Geol. 25: 977-987. doi: 10.1016/j.marpetgeo.2008.01.014
Steen AD, Hamdan LJ, Arnosti C (2008) Dynamics of dissolved carbohydrates in the Chesapeake Bay: Insights from enzyme activities, concentrations, and microbial metabolism. Limnol. Oceanogr. 53: 936-947. doi: 10.4319/LO.2008.53.3.0936
Boyd TJ, Smith DC, Apple JK, Hamdan LJ, Osburn CL, Montgomery MT (2008) Evaluating PAH biodegradation relative to bacterial carbon demand in coastal ecosystems: Are PAHs truly recalcitrant? In: Microbial Ecology Research Trends. NOVA Sci. Publishers, Inc., Hauppauge, NY. Link
2007
Hamdan LJ, Jonas RB (2007) The use of antibiotics to reduce bacterioplankton uptake of phytoplankton extracellular organic carbon (EOC) in the Potomac River estuary. JEMBE. 342: 242-252, doi: 10.1016/j.jembe.2006.10.054
Coffin RB, Pohlman JW, Gardner JM, Downer RC, Wood WT, Hamdan LJ, Walker SE, Plummer RE, Gettrust JF, Diaz J (2007) Methane hydrate exploration on the mid-Chilean Coast: A geochemical and geophysical survey. J Petrol. Sci. Eng. 56: 32-41. doi: 10.1016/j.petrol.2006.01.013
2006
Hamdan LJ, Jonas RB (2006) Seasonal and inter-annual dynamics of free-living bacterioplankton and microbially labile organic carbon along the salinity gradient of the Potomac River. Estuaries Coasts. 29: 40-53. Link
2005
Salerno JL, Macko SA, Hallam SJ, Bright M, Won YJ, McKiness Z, Van Dover CL (2005) Characterization of symbiont populations in life-history stages of mussels from chemosynthetic environments. Biol. Bull. 208(2): 145-155. doi: 10.2307/3593123
2003
Van Dover CL, Aharon P, Bernhard JM, Caylor E, Doerries M, Flickinger W, Gilhooly W, Goffredi SK, Knick KE, Macko SA, Rapoport S, Raulfs EC, Ruppel C, Salerno JL, Seitz RD, Sen Gupta BK, Shank T, Turnipseed M, Vrijenhoek R (2003) Blake Ridge methane seeps: characterization of a soft-sediment, chemosynthetically based ecosystem. Deep-Sea Research. 50(2): 281-300. doi: 10.1016/S0967-0637(02)00162-0