Publications

2016

Hamdan, LJ, Wickland, KP. (In press). Methane emissions from oceans, wetlands, and freshwater habitats: New perspectives and feedbacks on climate. Limnology and Oceanography.

Damour, M, Church, R, Warren, D, Horrell, C, Hamdan, LJ. 2016. Gulf of Mexico-Shipwreck Corrosion, Hydrocarbon Exposure, Microbiology, and Archaeology (GOM-SCHEMA) Project: Studying the Effects of a Major Oil Spill on Submerged Cultural Resources. In Marco Meniketti (ed.) ACUA Underwater Archaeology Proceedings of the 2015 Annual Meeting of the Society for Historical Archaeology, Seattle, WA, pgs. 51–61.

Salerno, J.L., Bowen, B.W., and M.S. Rappé. Biogeography of planktonic and coral-associated microorganisms across the Hawaiian Archipelago. 2016. FEMS Microbial Ecology 92(8): pii: fiww109. DOI: http://dx.doi.org/10.1093/femsec/fiw109

2014

Treude, T, Krause, S, Schweers, J, Dale, A, Hamdan, LJ. 2014. Sulfate reduction and methane oxidation activity below the sulfate-methane transition zone in Alaskan-Beaufort continental margin sediments: Implications for deep sulfur cycling. Geochim. Cosmochim. Acta 144: 217-237.

Kirchman, DL, Hanson, TE, Cottrell, MT, Hamdan, LJ. 2014. Metagenomic analysis of organic matter degradation in methane-rich Arctic Ocean sediments. Limnol. Oceanogr. 59: 548-559.

Coffin, RB, Hamdan, LJ, Smith, J, Plummer, RE, Yoza, B, Pecher, I, Montgomery, MT. 2014. The Contribution of Vertical Methane Flux to Shallow Sediment Carbon Pools across the Porangahau Ridge, NZ. Energies 7: 5322-5356.

Gilbert, JA, Ball, M, Blainey, P, Blaser, MJ, Bohannan, B, Bateman, A, Bunge, J, Dominguez-Bello, MG, Epstein, S, Fierer, N, Gevers, D, Girkscheit, T, Hamdan, LJ, Harvey, J, Huttenhower, C, Kirkup, B, Kong, H, Lauber, C, Lemon, KP, Lynch, SV, Martin, L, Mello, C, Palma, J, Parker, R, Petrosino, J, Segre, JA, Vosshall, L, Yi, R, Knight, R. 2014. Meeting Report for the 1st skin microbiota workshop, boulder, CO October 15-16 2012. Stand. Genomic Sci. 9:1-7.

Leary, DH, Li, RW, Hervey, WJ, Lebedev, N, Hamdan, LJ, Wang, Z, Deschamps, JR, Kusterbeck, AW, Vora, GJ. 2014. Intergrated metagenomic and metaproteomic analyses of marine biofilms communities. Biofouling 30: 1211-1223.

2013

Hamdan, LJ, Coffin, RB, Sikaroodi, M, Greinert, J, Treude, T, Gillevet, PM. 2013. Ocean currents shape the microbiome of Arctic marine sediments. ISME J. 7: 685-696.

2012

Hamdan, LJ, Sikaroodi, M, Gillevet, PM. 2012. Bacterial community composition and diversity in methane charged sediments revealed by multitag pyrosequencing. Geomicrobiology J. 29:340-351

Howard, EC, Hamdan, LJ, Lizewski, SE, Ringeisen, BR. 2012. High frequency of glucose-utilizing mutants in Shewanella oneidensis MR-1. FEMS Microbiol. Lett. 327: 9-14.

2011

Hamdan, LJ, Fulmer, PA. 2011. Effects of COREXIT® EC9500A on bacteria from a beach oiled by the Deepwater Horizon spill. Aquatic Microbial Ecol. 63: 101-109. (Feature Article)

Hamdan, LJ, Gillevet, PM, Pohlman, JW, Sikaroodi, M, Greinert, J, Coffin, RB. 2011. Diversity and biogeochemical structuring of bacterial communities across the Porangahau ridge accretionary prism, New Zealand. FEMS Microbiol. Ecol. 77: 518-532.

Salerno, J.L., D.R. Reineman, R.D. Gates, and M.S. Rappé. 2011. The effect of a sub lethal temperature elevation on the structure of bacterial communities associated with the coral Porites Compressa. Journal of Marine Biology Article ID 969173, 9 pages, doi: 10.1155/2011/969173. open access

2010

Schwalenberg, K, Wood, WT, Pecher, I, Hamdan, LJ, Henrys, S, Jegen, M, Coffin, RB. 2010 Preliminary interpretation of CSEM, heatflow, seismic, and geochemical data for gas hydrate distribution across the Porangahau Ridge, New Zealand. Mar. Geol. 272: 89-98

2008

Hamdan, LJ, Gillevet, PM, Sikaroodi, M, Pohlman, JW, Plummer, RE, Coffin, RB. 2008. Geomicrobial characterization of gas hydrate bearing sediments along the mid-Chilean Margin. FEMS Microbiol. Ecol. 65: 15-30

Coffin, RB, Hamdan, LJ, Smith, JP, Gardner, J, Plummer, RE, Wood, WT. 2008. Analysis of methane and sulfate flux in methane-charged sediments from the Mississippi Canyon, Gulf of Mexico. Mar. Petrol. Geol. 25: 977-987

Steen, AD, Hamdan, LJ, Arnosti, C. 2008. Dynamics of dissolved carbohydrates in the Chesapeake Bay: Insights from enzyme activities, concentrations, and microbial metabolism. Limnol. Oceanogr. 53: 936-947

Boyd, TJ, Smith, DC, Apple, JK, Hamdan, LJ, Osburn, CL, Montgomery, MT. 2008. Evaluating PAH biodegradation relative to bacterial carbon demand in coastal ecosystems: Are PAHs truly recalcitrant? In: Microbial Ecology Research Trends. NOVA Sci. Publishers, Inc., Hauppauge, NY

2007

Hamdan, LJ, Jonas, RB. 2007. The use of antibiotics to reduce bacterioplankton uptake of phytoplankton extracellular organic carbon (EOC) in the Potomac River estuary. JEMBE 342: 242-252

Coffin, RB, Pohlman, JW, Gardner, JM, Downer, RC, Wood, WT, Hamdan, LJ, Walker, SE, Plummer, RE, Gettrust, JF, Diaz, J. 2007. Methane hydrate exploration on the mid-Chilean Coast: A geochemical and geophysical survey. J Petrol. Sci. Eng. 56: 32-41

2006

Hamdan, LJ, Jonas RB. 2006. Seasonal and inter-annual dynamics of free-living bacterioplankton and microbially labile organic carbon along the salinity gradient of the Potomac River. Estuaries Coasts 29:40 – 53

2005

Salerno, J.L., S.A. Macko, S.J. Hallam, M. Bright, Y.J. Won, Z. McKiness, C.L. Van Dover. 2005. Characterization of symbiont populations in life-history stages of mussels from chemosynthetic environments. Biological Bulletin 208(2): 145-155. download here

2003

Van Dover, C.L., P. Aharon, J.M. Bernhard, E. Caylor, M. Doerries, W. Flickinger, W. Gilhooly, S.K. Goffredi, K.E. Knick, S.A. Macko, S. Rapoport, E.C. Raulfs, C. Ruppel, J.L. Salerno, R.D. Seitz, B.K. Sen Gupta, T. Shank, M. Turnipseed, R. Vrijenhoek, E. 2003. Blake Ridge methane seeps: characterization of a soft-sediment, chemosynthetically based ecosystem. Deep-Sea Research I 50(2): 281-300.

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